Package: EurosarcBayes 1.1

EurosarcBayes: Bayesian Single Arm Sample Size Calculation Software

Bayesian sample size calculation software and examples for EuroSARC clinical trials which utilise Bayesian methodology. These trials rely on binomial based endpoints so the majority of programs found here relate to this sort of endpoint. Developed as part of the EuroSARC FP7 grant.

Authors:Peter Dutton

EurosarcBayes_1.1.tar.gz
EurosarcBayes_1.1.zip(r-4.5)EurosarcBayes_1.1.zip(r-4.4)EurosarcBayes_1.1.zip(r-4.3)
EurosarcBayes_1.1.tgz(r-4.4-any)EurosarcBayes_1.1.tgz(r-4.3-any)
EurosarcBayes_1.1.tar.gz(r-4.5-noble)EurosarcBayes_1.1.tar.gz(r-4.4-noble)
EurosarcBayes_1.1.tgz(r-4.4-emscripten)EurosarcBayes_1.1.tgz(r-4.3-emscripten)
EurosarcBayes.pdf |EurosarcBayes.html✨
EurosarcBayes/json (API)

# Install 'EurosarcBayes' in R:
install.packages('EurosarcBayes', repos = c('https://finite2.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.36 score 23 scripts 217 downloads 1 mentions 38 exports 35 dependencies

Last updated 7 years agofrom:ebc493cfc4. Checks:OK: 5 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winWARNINGNov 08 2024
R-4.5-linuxWARNINGNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:bayes_binom_one_postlike_nstagebayes_binom_one_postprob_nstagebayes_binom_one_postprob_onestagebayes_binom_two_lossbayes_binom_two_postlikebayes_binom_two_postprobbinom_one_alphabinom_one_assurancebinom_one_powerbinom_two_bryantdaybinom_two_singlestagefreq_binom_one_landemetsfreq_binom_one_onestagefreq_binom_one_simons_twostagefreq_binom_two_bryantday_twostagefreq_binom_two_singlestageplotplot_binom_one_powerplot_binomassuranceprintprint.list_trialDesign_binom_twopropertiesproperties_binom_oneshiny_binom_single_onestageshiny_binom_single_twostageshiny_LINES_posteriorshowtradeoff_ellipse_graphtradeoff_ellipse_integratetradeoff_linear_graphtradeoff_linear_integratetradeoff_ratio_graphtradeoff_ratio_integratetradeoff_ratio_interceptstradeoff_square_graphtradeoff_square_integratetrialDesign_binom_onetrialDesign_binom_two

Dependencies:base64encbslibcachemcliclinfuncommonmarkcrayondata.tabledigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmemoisemimemvtnormplyrpromisesR6rappdirsRcpprlangsassshinysourcetoolsVGAMwithrxtable

Readme and manuals

Help Manual

Help pageTopics
Bayesian sample size calculation softwareEurosarcBayes-package EurosarcBayes
Single arm, any stage, cut-point calculator us posterior predictive distribution of a successful trial occurring to make the cuts.bayes_binom_one_postlike_nstage
Single arm, any stage, cut-point calculator using posterior probabilities to make the cuts.bayes_binom_one_postprob_nstage
Bayesian single-arm single-endpoint minimum sample sizebayes_binom_one_postprob_onestage shiny_binom_single_onestage
Bayesian, single arm, two endpoint trial designs, using loss functions to make decisionsbayes_binom_two_loss
Bayesian, single arm, two endpoint trial designs.bayes_binom_two_postlike
Bayesian, single arm, two endpoint trial design, using posterior probability to make decisions.bayes_binom_two_postprob
Single arm, exact p-value calculator for single or multi-stage binomial trials.binom_one_alpha
Single arm, assurance calculator for single or multi-stage binomial trials.binom_one_assurance plot_binomassurance
Single arm, power calculator for single or multi-stage binomial trials.binom_one_power plot_binom_one_power
Class '"binom_two_bryantday"'binom_two_bryantday binom_two_bryantday-class
Class '"binom_two_singlestage"'binom_two_singlestage binom_two_singlestage-class
Single arm, two stage, Binomial sample size calculatorfreq_binom_one_landemets
Bayesian single-arm single-endpoint minimum sample sizefreq_binom_one_onestage
Single arm, two stage, Binomial sample size calculatorfreq_binom_one_simons_twostage shiny_binom_single_twostage
Single arm, two independent endpoint extension to Simons two-stage designfreq_binom_two_bryantday_twostage
Frequentist single-arm two-endpoint trial sample sizefreq_binom_two_singlestage
Bayesian, single arm, two endpoint trial design, using posterior probability to make decisions.list_trialDesign_binom_two print.list_trialDesign_binom_two
Properties for single-arm single binomial endpoint trial designproperties_binom_one
~~ Methods for Function 'properties' in Package 'EurosarcBayes' ~~properties properties,ANY-method properties,binom_two_bryantday-method properties,binom_two_singlestage-method properties-methods
LINES prior-posterior distribution with posterior probabilitiesshiny_LINES_posterior
Functions for integration for Bayesian loss methodologytradeoff_ellipse_graph tradeoff_ellipse_integrate
Functions for integration for Bayesian loss methodologytradeoff_linear_graph tradeoff_linear_integrate
Functions for integration for Bayesian loss methodologytradeoff_ratio_graph tradeoff_ratio_integrate tradeoff_ratio_intercepts
Functions for integration for Bayesian loss methodologytradeoff_square_graph tradeoff_square_integrate
Class '"trialDesign_binom_one"'plot,trialDesign_binom_one,ANY-method print,trialDesign_binom_one-method show,trialDesign_binom_one-method trialDesign_binom_one trialDesign_binom_one-class
Class '"trialDesign_binom_two"'plot,trialDesign_binom_two,ANY-method print,trialDesign_binom_two-method show,trialDesign_binom_two-method trialDesign_binom_two trialDesign_binom_two-class